Thanks Jay. I'll reconsider the approach and give it a shot.
Just in case you are thinking about it incorrectly, you don't have to shut things off for a long time. Often times if you can catch a time when you see things failing consistently (such as getting several failures in a row), you can do your tests then. Since the basement is new, think about just turning off those circuits. If things immediately improve on the devices that were failing, then you start narrowing from there.
Of course, it could be totally random in the pattern it is generating noise, but most of the time it is sometime repeatable... a particular appliance, light fixture, switch/device, etc. So shutting power to that has an immediate impact on stopping the timeouts.
It is a pain, no doubt. I've only had to do it once that I remember even with a bunch of INSTEON devices.
Adam