In the spirit of lessons learned:
I have had an Indigo installation going for about two years. I have a Mac Mini (server) in the basement that does everything: Indigo, iTunes, file sharing, telephone stuff, media server (Plex), and lesser included offenses. I originally bought a Lion server Mac Mini, tried to implement server stuff, decided it was too hard and gave up. Upgraded at every opportunity to the next Mac OS. Meanwhile, I've been gradually increasing the installed devices in my house as well as adding outlets, lights, etc. From day one I've had noise issues. I bought a ton of Filterlincs and use them, that brought the noise down to a manageable level but it still caused lots of red in the logs, mismatched keypads, etc. The issues were intermittent and random; extremely difficult to troubleshoot. Lots of red in my event logs; had come to accept it as normal.
So yesterday I erased the Mac Mini (was having other issues with iTunes) and reinstalled Mavericks and all the apps that we use. I copied the databases/preferences back from Time Machine, but the software/plugins are all fresh installs from scratch. I also replaced the PowerLinc.
Had some serious problems with my system afterwards. Lots of devices (essentially all the keypads, plus some fanlincs) refused to respond or resync links, so I had to redefine and sync them. But even then, some refused to define and sync multiple times. I had to factory reset the devices (about ten or so) to get them to work. I then walked around from room to room with my iPod, turning on/off every single device to ensure that it worked from Indigo (local links, deceptively, never quit working).
I was convinced I had perennial noise issues, but when I took a look at the log there was no red - none. So it *seems* like I have skinned the noise/comms issues.
Where did they come from initially? I suspect some of it comes from the incredibly wild voltage swings we have out here in rural Maryland. It is not uncommon to hear the UPSes wind up several times a week, or watch the lights dim momentarily. I suspect the rest came from my installation. Turning the breaker on/off to install new gear probably introduced some configuration problems. That is, for the most part, over. Any further installs I do, I will be especially careful to "groom" the devices on that circuit from Indigo with a fresh resync just to prevent any issues.
I may be totally wrong with all this, but that's what everything looks like at this point. Hopefully this will help the next person diagnose and treat noise/comms issues.